Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Wnt10b-205ENSMUST00000226846 1204 ntBASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Scaf4Q6PFF0 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Gm6365-201ENSMUST00000054711 744 ntBASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scaf4Q6PFF0 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scaf4Q6PFF0 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scaf4Q6PFF0 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scaf4Q6PFF0 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scaf4Q6PFF0 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Gm18671-201ENSMUST00000214826 683 ntBASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scaf4Q6PFF0 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.07■□□□□ 0.32
Scaf4Q6PFF0 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scaf4Q6PFF0 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Scaf4Q6PFF0 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms