Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.16■□□□□ 0.34
Col12a1Q60847 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC17.16■□□□□ 0.34
Col12a1Q60847 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Col12a1Q60847 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Col12a1Q60847 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Col12a1Q60847 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col12a1Q60847 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.16■□□□□ 0.34
Col12a1Q60847 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col12a1Q60847 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col12a1Q60847 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col12a1Q60847 Gm37025-201ENSMUST00000195159 829 ntBASIC17.16■□□□□ 0.34
Col12a1Q60847 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col12a1Q60847 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col12a1Q60847 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col12a1Q60847 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col12a1Q60847 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col12a1Q60847 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col12a1Q60847 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col12a1Q60847 Gm13127-201ENSMUST00000118978 1389 ntBASIC17.15■□□□□ 0.34
Col12a1Q60847 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.14■□□□□ 0.34
Col12a1Q60847 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Col12a1Q60847 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.33
Col12a1Q60847 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col12a1Q60847 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.14■□□□□ 0.33
Col12a1Q60847 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Col12a1Q60847 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col12a1Q60847 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col12a1Q60847 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col12a1Q60847 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col12a1Q60847 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.14■□□□□ 0.33
Col12a1Q60847 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Col12a1Q60847 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col12a1Q60847 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col12a1Q60847 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.14■□□□□ 0.33
Col12a1Q60847 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col12a1Q60847 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.14■□□□□ 0.33
Col12a1Q60847 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.14■□□□□ 0.33
Col12a1Q60847 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.14■□□□□ 0.33
Col12a1Q60847 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC17.13■□□□□ 0.33
Col12a1Q60847 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.13■□□□□ 0.33
Col12a1Q60847 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col12a1Q60847 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col12a1Q60847 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col12a1Q60847 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.12■□□□□ 0.33
Col12a1Q60847 Gm24513-201ENSMUST00000174964 138 ntBASIC17.12■□□□□ 0.33
Col12a1Q60847 Gm27867-201ENSMUST00000184778 125 ntBASIC17.12■□□□□ 0.33
Col12a1Q60847 AC158982.1-201ENSMUST00000228377 901 ntBASIC17.12■□□□□ 0.33
Col12a1Q60847 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col12a1Q60847 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.12■□□□□ 0.33
Col12a1Q60847 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.12■□□□□ 0.33
Col12a1Q60847 Gm10175-201ENSMUST00000086013 645 ntBASIC17.12■□□□□ 0.33
Col12a1Q60847 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.12■□□□□ 0.33
Col12a1Q60847 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col12a1Q60847 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col12a1Q60847 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Col12a1Q60847 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col12a1Q60847 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC17.11■□□□□ 0.33
Col12a1Q60847 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col12a1Q60847 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.11■□□□□ 0.33
Col12a1Q60847 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col12a1Q60847 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Col12a1Q60847 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col12a1Q60847 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col12a1Q60847 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col12a1Q60847 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col12a1Q60847 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col12a1Q60847 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms