Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC19.67■□□□□ 0.74
Usp28Q5I043 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Usp28Q5I043 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 Gm11620-201ENSMUST00000118770 1845 ntBASIC19.67■□□□□ 0.74
Usp28Q5I043 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp28Q5I043 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.66■□□□□ 0.74
Usp28Q5I043 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Gm42545-201ENSMUST00000202755 922 ntBASIC19.66■□□□□ 0.74
Usp28Q5I043 Gm18025-201ENSMUST00000221733 862 ntBASIC19.66■□□□□ 0.74
Usp28Q5I043 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Usp28Q5I043 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.66■□□□□ 0.74
Usp28Q5I043 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp28Q5I043 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Haglr-201ENSMUST00000100000 2085 ntBASIC19.65■□□□□ 0.74
Usp28Q5I043 Gm13158-201ENSMUST00000122007 736 ntBASIC19.65■□□□□ 0.74
Usp28Q5I043 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC19.65■□□□□ 0.74
Usp28Q5I043 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp28Q5I043 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp28Q5I043 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Usp28Q5I043 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp28Q5I043 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.64■□□□□ 0.73
Usp28Q5I043 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
Usp28Q5I043 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Usp28Q5I043 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp28Q5I043 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.63■□□□□ 0.73
Usp28Q5I043 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Usp28Q5I043 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Usp28Q5I043 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.63■□□□□ 0.73
Usp28Q5I043 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Usp28Q5I043 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.62■□□□□ 0.73
Usp28Q5I043 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Usp28Q5I043 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Usp28Q5I043 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.62■□□□□ 0.73
Usp28Q5I043 Gm20049-201ENSMUST00000219950 730 ntBASIC19.62■□□□□ 0.73
Usp28Q5I043 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp28Q5I043 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Usp28Q5I043 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Usp28Q5I043 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.61■□□□□ 0.73
Usp28Q5I043 Gm13216-201ENSMUST00000117145 591 ntBASIC19.61■□□□□ 0.73
Usp28Q5I043 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.61■□□□□ 0.73
Usp28Q5I043 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.61■□□□□ 0.73
Usp28Q5I043 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms