Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3bQ3ULL6 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3bQ3ULL6 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3bQ3ULL6 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3bQ3ULL6 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3bQ3ULL6 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3bQ3ULL6 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Upf3bQ3ULL6 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.51■□□□□ 0.55
Upf3bQ3ULL6 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Mir5122-201ENSMUST00000175004 89 ntBASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3bQ3ULL6 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3bQ3ULL6 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3bQ3ULL6 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.48■□□□□ 0.55
Upf3bQ3ULL6 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Upf3bQ3ULL6 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3bQ3ULL6 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3bQ3ULL6 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3bQ3ULL6 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Odf3b-204ENSMUST00000227834 930 ntBASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3bQ3ULL6 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3bQ3ULL6 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms