Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col2a1P28481 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col2a1P28481 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.68■□□□□ 0.74
Col2a1P28481 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.68■□□□□ 0.74
Col2a1P28481 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC19.68■□□□□ 0.74
Col2a1P28481 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Gm17971-201ENSMUST00000190239 806 ntBASIC19.68■□□□□ 0.74
Col2a1P28481 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC19.68■□□□□ 0.74
Col2a1P28481 Gm18669-201ENSMUST00000216049 778 ntBASIC19.68■□□□□ 0.74
Col2a1P28481 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.68■□□□□ 0.74
Col2a1P28481 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Col2a1P28481 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col2a1P28481 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col2a1P28481 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Gm6623-201ENSMUST00000173570 544 ntBASIC19.67■□□□□ 0.74
Col2a1P28481 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Col2a1P28481 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.67■□□□□ 0.74
Col2a1P28481 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.67■□□□□ 0.74
Col2a1P28481 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Col2a1P28481 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.67■□□□□ 0.74
Col2a1P28481 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col2a1P28481 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Col2a1P28481 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col2a1P28481 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.66■□□□□ 0.74
Col2a1P28481 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.66■□□□□ 0.74
Col2a1P28481 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Col2a1P28481 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Gm28033-201ENSMUST00000184224 96 ntBASIC19.66■□□□□ 0.74
Col2a1P28481 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC19.66■□□□□ 0.74
Col2a1P28481 Gm44450-201ENSMUST00000199528 114 ntBASIC19.66■□□□□ 0.74
Col2a1P28481 Gm45328-201ENSMUST00000210942 917 ntBASIC19.66■□□□□ 0.74
Col2a1P28481 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.66■□□□□ 0.74
Col2a1P28481 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col2a1P28481 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.65■□□□□ 0.74
Col2a1P28481 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Gm27742-201ENSMUST00000184667 60 ntBASIC19.65■□□□□ 0.74
Col2a1P28481 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.65■□□□□ 0.74
Col2a1P28481 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC19.65■□□□□ 0.74
Col2a1P28481 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col2a1P28481 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col2a1P28481 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Col2a1P28481 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col2a1P28481 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Gm11336-201ENSMUST00000118168 334 ntBASIC19.64■□□□□ 0.73
Col2a1P28481 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Col2a1P28481 Gm27741-201ENSMUST00000185060 237 ntBASIC19.64■□□□□ 0.73
Col2a1P28481 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Otx2os1-206ENSMUST00000228153 787 ntBASIC19.64■□□□□ 0.73
Col2a1P28481 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col2a1P28481 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Col2a1P28481 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col2a1P28481 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.63■□□□□ 0.73
Col2a1P28481 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms