Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Gm9449-201ENSMUST00000207265 1011 ntBASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-4Q9EQM3 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Gm7856-201ENSMUST00000117514 1493 ntBASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-4Q9EQM3 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-4Q9EQM3 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Gm11594-201ENSMUST00000122313 162 ntBASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nkx2-4Q9EQM3 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nkx2-4Q9EQM3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nkx2-4Q9EQM3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.43
Nkx2-4Q9EQM3 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nkx2-4Q9EQM3 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
Nkx2-4Q9EQM3 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-4Q9EQM3 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 AC138767.1-201ENSMUST00000222661 415 ntBASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-4Q9EQM3 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nkx2-4Q9EQM3 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms