Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Brf1Q8CFK2 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Brf1Q8CFK2 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Brf1Q8CFK2 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Brf1Q8CFK2 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.93■□□□□ 0.94
Brf1Q8CFK2 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Brf1Q8CFK2 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Mir5122-201ENSMUST00000175004 89 ntBASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Brf1Q8CFK2 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms