Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 AV356131-201ENSMUST00000206201 750 ntBASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc28aQ8CEI3 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc28aQ8CEI3 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Ccdc28aQ8CEI3 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc28aQ8CEI3 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc28aQ8CEI3 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc28aQ8CEI3 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc28aQ8CEI3 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc28aQ8CEI3 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc28aQ8CEI3 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Ccdc28aQ8CEI3 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Gm7290-201ENSMUST00000104990 617 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Gm12918-201ENSMUST00000120234 636 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Gm15710-201ENSMUST00000121821 636 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Gm5075-201ENSMUST00000196916 622 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc28aQ8CEI3 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Haglr-201ENSMUST00000100000 2085 ntBASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Gm6211-202ENSMUST00000167849 925 ntBASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Flg-201ENSMUST00000050758 1488 ntBASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.31■□□□□ 0.52
Ccdc28aQ8CEI3 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Gm44549-201ENSMUST00000208351 577 ntBASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc28aQ8CEI3 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms