Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.74■□□□□ 0.75
Usp28Q5I043 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.74■□□□□ 0.75
Usp28Q5I043 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp28Q5I043 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp28Q5I043 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC19.73■□□□□ 0.75
Usp28Q5I043 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp28Q5I043 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp28Q5I043 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp28Q5I043 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.73■□□□□ 0.75
Usp28Q5I043 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Usp28Q5I043 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
Usp28Q5I043 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.73■□□□□ 0.75
Usp28Q5I043 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Usp28Q5I043 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp28Q5I043 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp28Q5I043 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp28Q5I043 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.72■□□□□ 0.75
Usp28Q5I043 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
Usp28Q5I043 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.72■□□□□ 0.75
Usp28Q5I043 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.72■□□□□ 0.75
Usp28Q5I043 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp28Q5I043 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.71■□□□□ 0.75
Usp28Q5I043 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.71■□□□□ 0.75
Usp28Q5I043 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.71■□□□□ 0.75
Usp28Q5I043 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp28Q5I043 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp28Q5I043 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.7■□□□□ 0.74
Usp28Q5I043 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp28Q5I043 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.69■□□□□ 0.74
Usp28Q5I043 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Usp28Q5I043 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.69■□□□□ 0.74
Usp28Q5I043 Gm10602-201ENSMUST00000098239 609 ntBASIC19.69■□□□□ 0.74
Usp28Q5I043 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp28Q5I043 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Usp28Q5I043 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp28Q5I043 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Usp28Q5I043 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp28Q5I043 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp28Q5I043 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Usp28Q5I043 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp28Q5I043 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
Usp28Q5I043 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp28Q5I043 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp28Q5I043 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms