Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Gm22325-201ENSMUST00000158904 308 ntBASIC17.21■□□□□ 0.35
Lima1Q9ERG0 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Gm7291-201ENSMUST00000199147 382 ntBASIC17.21■□□□□ 0.35
Lima1Q9ERG0 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lima1Q9ERG0 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lima1Q9ERG0 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Lima1Q9ERG0 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Lima1Q9ERG0 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.21■□□□□ 0.34
Lima1Q9ERG0 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lima1Q9ERG0 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lima1Q9ERG0 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lima1Q9ERG0 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lima1Q9ERG0 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lima1Q9ERG0 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Gm6211-202ENSMUST00000167849 925 ntBASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Lima1Q9ERG0 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms