Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RTRAFQ9CQE8 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RTRAFQ9CQE8 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RTRAFQ9CQE8 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Gm27032-201ENSMUST00000183124 1116 ntBASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Gm19094-201ENSMUST00000209791 1246 ntBASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Spcs1-204ENSMUST00000226782 949 ntBASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Gm5812-201ENSMUST00000061073 957 ntBASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RTRAFQ9CQE8 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RTRAFQ9CQE8 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RTRAFQ9CQE8 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
RTRAFQ9CQE8 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
RTRAFQ9CQE8 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RTRAFQ9CQE8 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RTRAFQ9CQE8 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RTRAFQ9CQE8 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RTRAFQ9CQE8 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RTRAFQ9CQE8 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC14.18□□□□□ -0.14
RTRAFQ9CQE8 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RTRAFQ9CQE8 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RTRAFQ9CQE8 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC14.18□□□□□ -0.14
RTRAFQ9CQE8 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms