Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp7Q8R1T1 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Gm26039-201ENSMUST00000158152 144 ntBASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 AC159205.3-201ENSMUST00000224614 874 ntBASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Chmp7Q8R1T1 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp7Q8R1T1 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Gm3272-201ENSMUST00000181181 1229 ntBASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Gm10566-201ENSMUST00000086739 996 ntBASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC22.28■■□□□ 1.16
Chmp7Q8R1T1 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp7Q8R1T1 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Mir8112-201ENSMUST00000184382 131 ntBASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp7Q8R1T1 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp7Q8R1T1 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms