Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Gm13836-201ENSMUST00000121159 501 ntBASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.55■□□□□ 0.88
Nup88Q8CEC0 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nup88Q8CEC0 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nup88Q8CEC0 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Gm37055-201ENSMUST00000191866 133 ntBASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nup88Q8CEC0 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC20.52■□□□□ 0.87
Nup88Q8CEC0 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.52■□□□□ 0.87
Nup88Q8CEC0 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Nup88Q8CEC0 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Nup88Q8CEC0 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nup88Q8CEC0 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Idnk-204ENSMUST00000226010 1898 ntBASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nup88Q8CEC0 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms