Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ptchd3Q0EEE2 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ptchd3Q0EEE2 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ptchd3Q0EEE2 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ptchd3Q0EEE2 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ptchd3Q0EEE2 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Ptchd3Q0EEE2 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Ptchd3Q0EEE2 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Ptchd3Q0EEE2 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ptchd3Q0EEE2 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Gm7291-201ENSMUST00000199147 382 ntBASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ptchd3Q0EEE2 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Gm42555-201ENSMUST00000199304 1039 ntBASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ptchd3Q0EEE2 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ptchd3Q0EEE2 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ptchd3Q0EEE2 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms