Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Msx1P13297 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Msx1P13297 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Msx1P13297 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
Msx1P13297 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC16.52■□□□□ 0.23
Msx1P13297 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Msx1P13297 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Msx1P13297 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.51■□□□□ 0.23
Msx1P13297 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Msx1P13297 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 Gm12382-201ENSMUST00000122005 922 ntBASIC16.51■□□□□ 0.23
Msx1P13297 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC16.51■□□□□ 0.23
Msx1P13297 Gm37292-201ENSMUST00000192062 758 ntBASIC16.51■□□□□ 0.23
Msx1P13297 Gm10517-202ENSMUST00000192970 758 ntBASIC16.51■□□□□ 0.23
Msx1P13297 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Msx1P13297 AC159205.6-201ENSMUST00000224935 887 ntBASIC16.51■□□□□ 0.23
Msx1P13297 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Msx1P13297 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC16.51■□□□□ 0.23
Msx1P13297 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC16.51■□□□□ 0.23
Msx1P13297 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Msx1P13297 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.51■□□□□ 0.23
Msx1P13297 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.5■□□□□ 0.23
Msx1P13297 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.5■□□□□ 0.23
Msx1P13297 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Msx1P13297 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC16.5■□□□□ 0.23
Msx1P13297 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Msx1P13297 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Msx1P13297 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Msx1P13297 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.49■□□□□ 0.23
Msx1P13297 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Rarb-207ENSMUST00000225921 2756 ntBASIC16.49■□□□□ 0.23
Msx1P13297 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.49■□□□□ 0.23
Msx1P13297 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Msx1P13297 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msx1P13297 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Msx1P13297 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC16.48■□□□□ 0.23
Msx1P13297 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Msx1P13297 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC16.48■□□□□ 0.23
Msx1P13297 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Msx1P13297 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Msx1P13297 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC16.48■□□□□ 0.23
Msx1P13297 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Gm23634-201ENSMUST00000175071 91 ntBASIC16.48■□□□□ 0.23
Msx1P13297 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.48■□□□□ 0.23
Msx1P13297 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.48■□□□□ 0.23
Msx1P13297 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.48■□□□□ 0.23
Msx1P13297 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msx1P13297 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.48■□□□□ 0.23
Msx1P13297 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.47■□□□□ 0.23
Msx1P13297 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Gm18959-201ENSMUST00000208954 655 ntBASIC16.47■□□□□ 0.23
Msx1P13297 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC16.47■□□□□ 0.23
Msx1P13297 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msx1P13297 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms