Protein–RNA interactions for Protein: O55055

Trdmt1, tRNA (cytosine(38)-C(5))-methyltransferase, mousemouse

Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdmt1O55055 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Trdmt1O55055 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Gm6623-201ENSMUST00000173570 544 ntBASIC19.21■□□□□ 0.67
Trdmt1O55055 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Trdmt1O55055 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trdmt1O55055 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trdmt1O55055 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC19.21■□□□□ 0.67
Trdmt1O55055 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trdmt1O55055 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.2■□□□□ 0.66
Trdmt1O55055 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.2■□□□□ 0.66
Trdmt1O55055 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Mir770-201ENSMUST00000103252 94 ntBASIC19.2■□□□□ 0.66
Trdmt1O55055 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trdmt1O55055 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.19■□□□□ 0.66
Trdmt1O55055 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Trdmt1O55055 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trdmt1O55055 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Trdmt1O55055 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Otx2os1-206ENSMUST00000228153 787 ntBASIC19.19■□□□□ 0.66
Trdmt1O55055 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.19■□□□□ 0.66
Trdmt1O55055 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trdmt1O55055 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.18■□□□□ 0.66
Trdmt1O55055 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC19.18■□□□□ 0.66
Trdmt1O55055 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trdmt1O55055 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.18■□□□□ 0.66
Trdmt1O55055 Mir3081-201ENSMUST00000175305 84 ntBASIC19.18■□□□□ 0.66
Trdmt1O55055 Gm27357-201ENSMUST00000183754 135 ntBASIC19.18■□□□□ 0.66
Trdmt1O55055 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trdmt1O55055 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trdmt1O55055 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trdmt1O55055 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trdmt1O55055 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trdmt1O55055 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Gm27742-201ENSMUST00000184667 60 ntBASIC19.17■□□□□ 0.66
Trdmt1O55055 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC19.17■□□□□ 0.66
Trdmt1O55055 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trdmt1O55055 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trdmt1O55055 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trdmt1O55055 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trdmt1O55055 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trdmt1O55055 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trdmt1O55055 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.16■□□□□ 0.66
Trdmt1O55055 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trdmt1O55055 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms