Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Clk3O35492 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clk3O35492 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clk3O35492 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clk3O35492 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clk3O35492 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clk3O35492 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clk3O35492 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Clk3O35492 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Clk3O35492 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Clk3O35492 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Clk3O35492 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Clk3O35492 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clk3O35492 Gm2399-201ENSMUST00000104944 225 ntBASIC16.58■□□□□ 0.24
Clk3O35492 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.58■□□□□ 0.24
Clk3O35492 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Clk3O35492 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC16.58■□□□□ 0.24
Clk3O35492 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Clk3O35492 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC16.58■□□□□ 0.24
Clk3O35492 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clk3O35492 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clk3O35492 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clk3O35492 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clk3O35492 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Clk3O35492 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Clk3O35492 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.58■□□□□ 0.24
Clk3O35492 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
Clk3O35492 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Clk3O35492 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.57■□□□□ 0.24
Clk3O35492 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.57■□□□□ 0.24
Clk3O35492 Gm12441-201ENSMUST00000121806 588 ntBASIC16.57■□□□□ 0.24
Clk3O35492 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.57■□□□□ 0.24
Clk3O35492 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Clk3O35492 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC16.56■□□□□ 0.24
Clk3O35492 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Clk3O35492 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
Clk3O35492 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.56■□□□□ 0.24
Clk3O35492 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Gm4968-201ENSMUST00000071458 858 ntBASIC16.56■□□□□ 0.24
Clk3O35492 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Clk3O35492 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Clk3O35492 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
Clk3O35492 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Clk3O35492 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Flg-201ENSMUST00000050758 1488 ntBASIC16.55■□□□□ 0.24
Clk3O35492 Gm43859-201ENSMUST00000200075 1412 ntBASIC16.55■□□□□ 0.24
Clk3O35492 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Gm29257-201ENSMUST00000186115 639 ntBASIC16.55■□□□□ 0.24
Clk3O35492 Gm2559-201ENSMUST00000201323 363 ntBASIC16.55■□□□□ 0.24
Clk3O35492 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Clk3O35492 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Clk3O35492 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
Clk3O35492 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Clk3O35492 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Clk3O35492 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.55■□□□□ 0.24
Clk3O35492 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
Clk3O35492 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.54■□□□□ 0.24
Clk3O35492 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Clk3O35492 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
Clk3O35492 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.54■□□□□ 0.24
Clk3O35492 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Clk3O35492 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms