Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav16d-dv11A0A075B617 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trav16d-dv11A0A075B617 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav16d-dv11A0A075B617 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav16d-dv11A0A075B617 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC12.83□□□□□ -0.35
Trav16d-dv11A0A075B617 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm12922-201ENSMUST00000120626 809 ntBASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm15546-201ENSMUST00000122095 826 ntBASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm16401-202ENSMUST00000197463 2074 ntBASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm37166-201ENSMUST00000195473 2474 ntBASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC12.83□□□□□ -0.36
Trav16d-dv11A0A075B617 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm20628-201ENSMUST00000177363 3215 ntBASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Smad6-203ENSMUST00000179458 273 ntBASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav16d-dv11A0A075B617 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Flvcr1-202ENSMUST00000191946 1216 ntBASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm38205-201ENSMUST00000192243 258 ntBASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm43137-201ENSMUST00000198052 594 ntBASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Trav16d-dv11A0A075B617 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms