Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Rpap3Q9D706 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.27■□□□□ 0.67
Rpap3Q9D706 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rpap3Q9D706 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Gm18101-201ENSMUST00000215769 548 ntBASIC19.25■□□□□ 0.67
Rpap3Q9D706 Gm7370-201ENSMUST00000219471 767 ntBASIC19.25■□□□□ 0.67
Rpap3Q9D706 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC19.25■□□□□ 0.67
Rpap3Q9D706 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rpap3Q9D706 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Rpap3Q9D706 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.24■□□□□ 0.67
Rpap3Q9D706 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.24■□□□□ 0.67
Rpap3Q9D706 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rpap3Q9D706 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Gm22697-201ENSMUST00000175194 63 ntBASIC19.23■□□□□ 0.67
Rpap3Q9D706 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rpap3Q9D706 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.22■□□□□ 0.67
Rpap3Q9D706 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpap3Q9D706 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Gm23634-201ENSMUST00000175071 91 ntBASIC19.21■□□□□ 0.67
Rpap3Q9D706 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rpap3Q9D706 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms