Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ubp1Q811S7 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.22■□□□□ 0.35
Ubp1Q811S7 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.21■□□□□ 0.35
Ubp1Q811S7 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Gm11643-201ENSMUST00000119578 864 ntBASIC17.21■□□□□ 0.35
Ubp1Q811S7 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.21■□□□□ 0.35
Ubp1Q811S7 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ubp1Q811S7 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ubp1Q811S7 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ubp1Q811S7 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ubp1Q811S7 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC17.2■□□□□ 0.34
Ubp1Q811S7 Mir1199-201ENSMUST00000117015 119 ntBASIC17.2■□□□□ 0.34
Ubp1Q811S7 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.2■□□□□ 0.34
Ubp1Q811S7 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Gm43182-201ENSMUST00000199476 2528 ntBASIC17.2■□□□□ 0.34
Ubp1Q811S7 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ubp1Q811S7 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.19■□□□□ 0.34
Ubp1Q811S7 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ubp1Q811S7 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.18■□□□□ 0.34
Ubp1Q811S7 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Ubp1Q811S7 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ubp1Q811S7 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ubp1Q811S7 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms