Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sh3rf1Q69ZI1 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sh3rf1Q69ZI1 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Sh3rf1Q69ZI1 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
Sh3rf1Q69ZI1 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Mir6982-201ENSMUST00000184354 68 ntBASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Gm2559-201ENSMUST00000201323 363 ntBASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sh3rf1Q69ZI1 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Gm38345-201ENSMUST00000192635 1748 ntBASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sh3rf1Q69ZI1 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sh3rf1Q69ZI1 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sh3rf1Q69ZI1 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms