Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Shmt1P50431 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Shmt1P50431 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.49■□□□□ 0.55
Shmt1P50431 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.49■□□□□ 0.55
Shmt1P50431 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Shmt1P50431 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Shmt1P50431 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Shmt1P50431 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Gm43799-201ENSMUST00000201845 579 ntBASIC18.48■□□□□ 0.55
Shmt1P50431 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Shmt1P50431 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Shmt1P50431 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Shmt1P50431 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Shmt1P50431 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.48■□□□□ 0.55
Shmt1P50431 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.48■□□□□ 0.55
Shmt1P50431 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Shmt1P50431 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
Shmt1P50431 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.47■□□□□ 0.55
Shmt1P50431 Gm11539-201ENSMUST00000119837 557 ntBASIC18.47■□□□□ 0.55
Shmt1P50431 Gm13436-201ENSMUST00000120418 567 ntBASIC18.47■□□□□ 0.55
Shmt1P50431 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Shmt1P50431 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.47■□□□□ 0.55
Shmt1P50431 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Shmt1P50431 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Shmt1P50431 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.46■□□□□ 0.55
Shmt1P50431 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.46■□□□□ 0.55
Shmt1P50431 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Shmt1P50431 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Shmt1P50431 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.46■□□□□ 0.55
Shmt1P50431 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
Shmt1P50431 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.45■□□□□ 0.54
Shmt1P50431 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Shmt1P50431 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
Shmt1P50431 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.45■□□□□ 0.54
Shmt1P50431 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Shmt1P50431 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Shmt1P50431 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.45■□□□□ 0.54
Shmt1P50431 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Shmt1P50431 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.45■□□□□ 0.54
Shmt1P50431 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.44■□□□□ 0.54
Shmt1P50431 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Gm13559-201ENSMUST00000120476 863 ntBASIC18.44■□□□□ 0.54
Shmt1P50431 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.44■□□□□ 0.54
Shmt1P50431 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms