Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Rfx1P48377 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Rfx1P48377 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.9■□□□□ 0.94
Rfx1P48377 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.9■□□□□ 0.94
Rfx1P48377 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.9■□□□□ 0.94
Rfx1P48377 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Gm15743-202ENSMUST00000182690 1901 ntBASIC20.9■□□□□ 0.94
Rfx1P48377 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx1P48377 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rfx1P48377 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Rfx1P48377 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rfx1P48377 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rfx1P48377 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Rfx1P48377 Gm7514-201ENSMUST00000209475 934 ntBASIC20.89■□□□□ 0.93
Rfx1P48377 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.89■□□□□ 0.93
Rfx1P48377 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx1P48377 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC20.89■□□□□ 0.93
Rfx1P48377 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Rfx1P48377 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx1P48377 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.88■□□□□ 0.93
Rfx1P48377 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.87■□□□□ 0.93
Rfx1P48377 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.87■□□□□ 0.93
Rfx1P48377 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Rfx1P48377 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx1P48377 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Rfx1P48377 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Rfx1P48377 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.86■□□□□ 0.93
Rfx1P48377 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx1P48377 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC20.86■□□□□ 0.93
Rfx1P48377 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Rfx1P48377 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Rfx1P48377 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.85■□□□□ 0.93
Rfx1P48377 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.85■□□□□ 0.93
Rfx1P48377 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.85■□□□□ 0.93
Rfx1P48377 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rfx1P48377 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms