Protein–RNA interactions for Protein: P28862

Mmp3, Stromelysin-1, mousemouse

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp3P28862 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Mmp3P28862 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Mmp3P28862 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Mmp3P28862 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.72■□□□□ 0.59
Mmp3P28862 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.72■□□□□ 0.59
Mmp3P28862 Gm21362-201ENSMUST00000194272 928 ntBASIC18.72■□□□□ 0.59
Mmp3P28862 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.72■□□□□ 0.59
Mmp3P28862 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Mmp3P28862 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.72■□□□□ 0.59
Mmp3P28862 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.72■□□□□ 0.59
Mmp3P28862 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Mmp3P28862 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.71■□□□□ 0.59
Mmp3P28862 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.71■□□□□ 0.59
Mmp3P28862 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Mmp3P28862 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC18.71■□□□□ 0.59
Mmp3P28862 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Mmp3P28862 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.71■□□□□ 0.59
Mmp3P28862 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Mmp3P28862 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.71■□□□□ 0.59
Mmp3P28862 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Mmp3P28862 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Mmp3P28862 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Mmp3P28862 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.7■□□□□ 0.58
Mmp3P28862 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.7■□□□□ 0.58
Mmp3P28862 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Mmp3P28862 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Mmp3P28862 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Mmp3P28862 Gm7367-201ENSMUST00000057611 492 ntBASIC18.7■□□□□ 0.58
Mmp3P28862 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Mmp3P28862 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Mmp3P28862 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Mmp3P28862 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Mmp3P28862 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.7■□□□□ 0.58
Mmp3P28862 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Mmp3P28862 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.69■□□□□ 0.58
Mmp3P28862 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC18.69■□□□□ 0.58
Mmp3P28862 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Mmp3P28862 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Mmp3P28862 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Mmp3P28862 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.68■□□□□ 0.58
Mmp3P28862 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Mir1668-201ENSMUST00000184114 107 ntBASIC18.68■□□□□ 0.58
Mmp3P28862 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.68■□□□□ 0.58
Mmp3P28862 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Mmp3P28862 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.68■□□□□ 0.58
Mmp3P28862 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Mmp3P28862 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms