Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Sdc1P18828 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Sdc1P18828 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Sdc1P18828 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Sdc1P18828 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Gm38345-201ENSMUST00000192635 1748 ntBASIC14.39□□□□□ -0.11
Sdc1P18828 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC14.39□□□□□ -0.11
Sdc1P18828 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Sdc1P18828 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Sdc1P18828 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC14.39□□□□□ -0.11
Sdc1P18828 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Sdc1P18828 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sdc1P18828 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Sdc1P18828 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Sdc1P18828 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Sdc1P18828 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Sdc1P18828 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC14.38□□□□□ -0.11
Sdc1P18828 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sdc1P18828 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Mir6538-201ENSMUST00000183713 110 ntBASIC14.37□□□□□ -0.11
Sdc1P18828 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC14.37□□□□□ -0.11
Sdc1P18828 Gm18755-201ENSMUST00000218030 1099 ntBASIC14.37□□□□□ -0.11
Sdc1P18828 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.37□□□□□ -0.11
Sdc1P18828 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sdc1P18828 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Sdc1P18828 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Sdc1P18828 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Sdc1P18828 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC14.36□□□□□ -0.11
Sdc1P18828 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC14.36□□□□□ -0.11
Sdc1P18828 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC14.36□□□□□ -0.11
Sdc1P18828 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Sdc1P18828 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Gm11841-201ENSMUST00000117060 1963 ntBASIC14.36□□□□□ -0.11
Sdc1P18828 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Sdc1P18828 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sdc1P18828 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Sdc1P18828 CT030146.1-201ENSMUST00000220919 217 ntBASIC14.35□□□□□ -0.11
Sdc1P18828 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sdc1P18828 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms