Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Clk4O35493 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Clk4O35493 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Clk4O35493 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.75■□□□□ 0.27
Clk4O35493 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clk4O35493 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.74■□□□□ 0.27
Clk4O35493 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.74■□□□□ 0.27
Clk4O35493 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.74■□□□□ 0.27
Clk4O35493 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Clk4O35493 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.74■□□□□ 0.27
Clk4O35493 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC16.74■□□□□ 0.27
Clk4O35493 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Clk4O35493 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Clk4O35493 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.74■□□□□ 0.27
Clk4O35493 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clk4O35493 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC16.73■□□□□ 0.27
Clk4O35493 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.73■□□□□ 0.27
Clk4O35493 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clk4O35493 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Clk4O35493 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Clk4O35493 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC16.72■□□□□ 0.27
Clk4O35493 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
Clk4O35493 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Clk4O35493 Gm18025-201ENSMUST00000221733 862 ntBASIC16.72■□□□□ 0.27
Clk4O35493 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC16.72■□□□□ 0.27
Clk4O35493 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clk4O35493 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Clk4O35493 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC16.71■□□□□ 0.27
Clk4O35493 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.71■□□□□ 0.27
Clk4O35493 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.71■□□□□ 0.27
Clk4O35493 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Clk4O35493 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Clk4O35493 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Clk4O35493 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Clk4O35493 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clk4O35493 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Clk4O35493 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms