Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trav11A0A0B4J1J9 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Trav11A0A0B4J1J9 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC12.05□□□□□ -0.48
Trav11A0A0B4J1J9 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
Trav11A0A0B4J1J9 Gm37519-201ENSMUST00000191687 2210 ntBASIC12.05□□□□□ -0.48
Trav11A0A0B4J1J9 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Trav11A0A0B4J1J9 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Gm13146-201ENSMUST00000118508 780 ntBASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trav11A0A0B4J1J9 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Gm13534-201ENSMUST00000121169 513 ntBASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Gm45417-201ENSMUST00000209533 758 ntBASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Idnk-204ENSMUST00000226010 1898 ntBASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Reep4-203ENSMUST00000226563 1444 ntBASIC12.03□□□□□ -0.48
Trav11A0A0B4J1J9 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trav11A0A0B4J1J9 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trav11A0A0B4J1J9 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trav11A0A0B4J1J9 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trav11A0A0B4J1J9 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trav11A0A0B4J1J9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Gm22325-201ENSMUST00000158904 308 ntBASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trav11A0A0B4J1J9 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Gm43672-201ENSMUST00000199072 1731 ntBASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC12.01□□□□□ -0.49
Trav11A0A0B4J1J9 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms