Protein–RNA interactions for Protein: Q9ERK0

Ripk4, Receptor-interacting serine/threonine-protein kinase 4, mousemouse

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ripk4Q9ERK0 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ripk4Q9ERK0 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ripk4Q9ERK0 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ripk4Q9ERK0 AC121598.2-201ENSMUST00000228376 2325 ntBASIC21.33■■□□□ 1
Ripk4Q9ERK0 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ripk4Q9ERK0 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ripk4Q9ERK0 Gm42922-201ENSMUST00000195887 2078 ntBASIC21.3■■□□□ 1
Ripk4Q9ERK0 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC21.3■■□□□ 1
Ripk4Q9ERK0 Gm45906-201ENSMUST00000208911 1430 ntBASIC21.29■■□□□ 1
Ripk4Q9ERK0 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Gm27463-201ENSMUST00000183569 57 ntBASIC21.29■■□□□ 1
Ripk4Q9ERK0 Gm10517-202ENSMUST00000192970 758 ntBASIC21.29■■□□□ 1
Ripk4Q9ERK0 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ripk4Q9ERK0 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Gm7856-201ENSMUST00000117514 1493 ntBASIC21.28■■□□□ 1
Ripk4Q9ERK0 AC108858.1-201ENSMUST00000228461 1498 ntBASIC21.28■■□□□ 1
Ripk4Q9ERK0 Gm12085-201ENSMUST00000119263 940 ntBASIC21.28■■□□□ 1
Ripk4Q9ERK0 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ripk4Q9ERK0 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ripk4Q9ERK0 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ripk4Q9ERK0 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Gm18959-201ENSMUST00000208954 655 ntBASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ripk4Q9ERK0 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms