Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Gm45606-201ENSMUST00000209836 2795 ntBASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Mir1199-201ENSMUST00000117015 119 ntBASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdc40Q9DC48 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdc40Q9DC48 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Cdc40Q9DC48 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdc40Q9DC48 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdc40Q9DC48 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Gm37055-201ENSMUST00000191866 133 ntBASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Cdc40Q9DC48 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Gm13836-201ENSMUST00000121159 501 ntBASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Gm38285-201ENSMUST00000192928 922 ntBASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
Cdc40Q9DC48 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC16.24■□□□□ 0.19
Cdc40Q9DC48 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Gm15565-201ENSMUST00000118890 427 ntBASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms