Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC20.42■□□□□ 0.86
Vps53Q8CCB4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 AC140264.2-202ENSMUST00000218746 817 ntBASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps53Q8CCB4 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.4■□□□□ 0.86
Vps53Q8CCB4 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vps53Q8CCB4 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vps53Q8CCB4 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vps53Q8CCB4 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps53Q8CCB4 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Vps53Q8CCB4 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Gm9987-201ENSMUST00000069768 567 ntBASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Flg-201ENSMUST00000050758 1488 ntBASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps53Q8CCB4 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms