Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trim28Q62318 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trim28Q62318 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trim28Q62318 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trim28Q62318 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC22.87■■□□□ 1.25
Trim28Q62318 Mir1668-201ENSMUST00000184114 107 ntBASIC22.87■■□□□ 1.25
Trim28Q62318 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC22.87■■□□□ 1.25
Trim28Q62318 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trim28Q62318 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trim28Q62318 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trim28Q62318 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trim28Q62318 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
Trim28Q62318 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC22.86■■□□□ 1.25
Trim28Q62318 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC22.86■■□□□ 1.25
Trim28Q62318 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC22.86■■□□□ 1.25
Trim28Q62318 Gm18101-201ENSMUST00000215769 548 ntBASIC22.86■■□□□ 1.25
Trim28Q62318 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
Trim28Q62318 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Trim28Q62318 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim28Q62318 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC22.85■■□□□ 1.25
Trim28Q62318 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC22.85■■□□□ 1.25
Trim28Q62318 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trim28Q62318 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim28Q62318 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
Trim28Q62318 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim28Q62318 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Trim28Q62318 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim28Q62318 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
Trim28Q62318 AC125311.2-201ENSMUST00000227477 1940 ntBASIC22.84■■□□□ 1.25
Trim28Q62318 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim28Q62318 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim28Q62318 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC22.83■■□□□ 1.25
Trim28Q62318 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trim28Q62318 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trim28Q62318 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
Trim28Q62318 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC22.83■■□□□ 1.25
Trim28Q62318 Gm6345-202ENSMUST00000180900 204 ntBASIC22.83■■□□□ 1.25
Trim28Q62318 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trim28Q62318 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trim28Q62318 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trim28Q62318 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trim28Q62318 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC22.83■■□□□ 1.24
Trim28Q62318 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Trim28Q62318 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC22.82■■□□□ 1.24
Trim28Q62318 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Trim28Q62318 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Trim28Q62318 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
Trim28Q62318 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trim28Q62318 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
Trim28Q62318 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC22.81■■□□□ 1.24
Trim28Q62318 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim28Q62318 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC22.81■■□□□ 1.24
Trim28Q62318 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC22.81■■□□□ 1.24
Trim28Q62318 Gm6728-201ENSMUST00000178117 1065 ntBASIC22.81■■□□□ 1.24
Trim28Q62318 Gm21559-201ENSMUST00000220638 855 ntBASIC22.81■■□□□ 1.24
Trim28Q62318 Gm8587-201ENSMUST00000076538 843 ntBASIC22.81■■□□□ 1.24
Trim28Q62318 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim28Q62318 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim28Q62318 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim28Q62318 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC22.81■■□□□ 1.24
Trim28Q62318 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
Trim28Q62318 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Trim28Q62318 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim28Q62318 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim28Q62318 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
Trim28Q62318 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
Trim28Q62318 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
Trim28Q62318 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Trim28Q62318 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC22.8■■□□□ 1.24
Trim28Q62318 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Trim28Q62318 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC22.8■■□□□ 1.24
Trim28Q62318 Gm7213-201ENSMUST00000215977 950 ntBASIC22.8■■□□□ 1.24
Trim28Q62318 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
Trim28Q62318 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms