Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Gm38027-201ENSMUST00000192315 235 ntBASIC21.06■□□□□ 0.96
Vps54Q5SPW0 AC135963.1-201ENSMUST00000211640 717 ntBASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps54Q5SPW0 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Zcchc6-207ENSMUST00000225576 2499 ntBASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps54Q5SPW0 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Mir7071-201ENSMUST00000184847 69 ntBASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps54Q5SPW0 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Gm43182-201ENSMUST00000199476 2528 ntBASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Gm30025-201ENSMUST00000218555 728 ntBASIC21.03■□□□□ 0.96
Vps54Q5SPW0 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps54Q5SPW0 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Vps54Q5SPW0 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC21.02■□□□□ 0.95
Vps54Q5SPW0 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC21.02■□□□□ 0.95
Vps54Q5SPW0 Gm43272-201ENSMUST00000200599 1584 ntBASIC21.02■□□□□ 0.95
Vps54Q5SPW0 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Vps54Q5SPW0 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps54Q5SPW0 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Vps54Q5SPW0 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC21■□□□□ 0.95
Vps54Q5SPW0 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Vps54Q5SPW0 Gm43799-201ENSMUST00000201845 579 ntBASIC21■□□□□ 0.95
Vps54Q5SPW0 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps54Q5SPW0 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC21■□□□□ 0.95
Vps54Q5SPW0 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps54Q5SPW0 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps54Q5SPW0 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC21■□□□□ 0.95
Vps54Q5SPW0 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Gm11539-201ENSMUST00000119837 557 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms