Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Trim41Q5NCC3 Gm28659-201ENSMUST00000188013 759 ntBASIC30.42■■■□□ 2.46
Trim41Q5NCC3 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Trim41Q5NCC3 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Trim41Q5NCC3 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Gm37374-201ENSMUST00000194954 1829 ntBASIC30.41■■■□□ 2.46
Trim41Q5NCC3 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim41Q5NCC3 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
Trim41Q5NCC3 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Gm13474-201ENSMUST00000122466 815 ntBASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
Trim41Q5NCC3 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim41Q5NCC3 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Il3ra-202ENSMUST00000223589 738 ntBASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim41Q5NCC3 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Gm5864-201ENSMUST00000202263 970 ntBASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Spr-ps1-201ENSMUST00000089584 605 ntBASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Trim41Q5NCC3 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Gm37025-201ENSMUST00000195159 829 ntBASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Gm7370-201ENSMUST00000219471 767 ntBASIC30.35■■■□□ 2.45
Trim41Q5NCC3 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC30.35■■■□□ 2.45
Trim41Q5NCC3 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Gm9731-201ENSMUST00000209480 747 ntBASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim41Q5NCC3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Trim41Q5NCC3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
Trim41Q5NCC3 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms