Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Limch1Q3UH68 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Limch1Q3UH68 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Gm11927-201ENSMUST00000118472 759 ntBASIC20.61■□□□□ 0.89
Limch1Q3UH68 Gm15565-201ENSMUST00000118890 427 ntBASIC20.61■□□□□ 0.89
Limch1Q3UH68 Gm37055-201ENSMUST00000191866 133 ntBASIC20.61■□□□□ 0.89
Limch1Q3UH68 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.61■□□□□ 0.89
Limch1Q3UH68 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.61■□□□□ 0.89
Limch1Q3UH68 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Limch1Q3UH68 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20.6■□□□□ 0.89
Limch1Q3UH68 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC20.6■□□□□ 0.89
Limch1Q3UH68 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Limch1Q3UH68 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.59■□□□□ 0.89
Limch1Q3UH68 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Limch1Q3UH68 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Limch1Q3UH68 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Limch1Q3UH68 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
Limch1Q3UH68 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.58■□□□□ 0.89
Limch1Q3UH68 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.58■□□□□ 0.89
Limch1Q3UH68 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.58■□□□□ 0.89
Limch1Q3UH68 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.58■□□□□ 0.89
Limch1Q3UH68 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Limch1Q3UH68 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Limch1Q3UH68 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Limch1Q3UH68 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Limch1Q3UH68 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC20.58■□□□□ 0.88
Limch1Q3UH68 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms