Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ptchd3Q0EEE2 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ptchd3Q0EEE2 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ptchd3Q0EEE2 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ptchd3Q0EEE2 Idnk-204ENSMUST00000226010 1898 ntBASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ptchd3Q0EEE2 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.3
Ptchd3Q0EEE2 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ptchd3Q0EEE2 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ptchd3Q0EEE2 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms