Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Hmgb1P63158 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb1P63158 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Hmgb1P63158 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Hmgb1P63158 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.27■□□□□ 0.68
Hmgb1P63158 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.27■□□□□ 0.68
Hmgb1P63158 Gm37179-201ENSMUST00000194862 823 ntBASIC19.27■□□□□ 0.68
Hmgb1P63158 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb1P63158 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Hmgb1P63158 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Hmgb1P63158 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Hmgb1P63158 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Hmgb1P63158 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Hmgb1P63158 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb1P63158 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Hmgb1P63158 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.25■□□□□ 0.67
Hmgb1P63158 Gm5408-201ENSMUST00000197998 747 ntBASIC19.25■□□□□ 0.67
Hmgb1P63158 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.25■□□□□ 0.67
Hmgb1P63158 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Hmgb1P63158 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.25■□□□□ 0.67
Hmgb1P63158 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.25■□□□□ 0.67
Hmgb1P63158 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb1P63158 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.24■□□□□ 0.67
Hmgb1P63158 Gm2559-201ENSMUST00000201323 363 ntBASIC19.24■□□□□ 0.67
Hmgb1P63158 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.24■□□□□ 0.67
Hmgb1P63158 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb1P63158 Gm43272-201ENSMUST00000200599 1584 ntBASIC19.23■□□□□ 0.67
Hmgb1P63158 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb1P63158 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb1P63158 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Hmgb1P63158 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.23■□□□□ 0.67
Hmgb1P63158 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb1P63158 Mir6349-201ENSMUST00000184059 97 ntBASIC19.23■□□□□ 0.67
Hmgb1P63158 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.23■□□□□ 0.67
Hmgb1P63158 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.23■□□□□ 0.67
Hmgb1P63158 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Hmgb1P63158 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb1P63158 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb1P63158 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb1P63158 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb1P63158 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Hmgb1P63158 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Hmgb1P63158 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.22■□□□□ 0.67
Hmgb1P63158 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.22■□□□□ 0.67
Hmgb1P63158 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Hmgb1P63158 Gm4968-201ENSMUST00000071458 858 ntBASIC19.22■□□□□ 0.67
Hmgb1P63158 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.22■□□□□ 0.67
Hmgb1P63158 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb1P63158 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms