Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC15.99■□□□□ 0.15
Cdh11P55288 Gm26971-201ENSMUST00000182423 1072 ntBASIC15.99■□□□□ 0.15
Cdh11P55288 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC15.99■□□□□ 0.15
Cdh11P55288 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Cdh11P55288 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdh11P55288 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC15.99■□□□□ 0.15
Cdh11P55288 Gm37563-201ENSMUST00000192580 1513 ntBASIC15.99■□□□□ 0.15
Cdh11P55288 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Cdh11P55288 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Gm13509-201ENSMUST00000119733 1308 ntBASIC15.98■□□□□ 0.15
Cdh11P55288 Gm10167-201ENSMUST00000150411 1479 ntBASIC15.98■□□□□ 0.15
Cdh11P55288 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
Cdh11P55288 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
Cdh11P55288 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Cdh11P55288 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC15.98■□□□□ 0.15
Cdh11P55288 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Cdh11P55288 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
Cdh11P55288 Gm12527-201ENSMUST00000117967 564 ntBASIC15.98■□□□□ 0.15
Cdh11P55288 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC15.98■□□□□ 0.15
Cdh11P55288 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC15.98■□□□□ 0.15
Cdh11P55288 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC15.98■□□□□ 0.15
Cdh11P55288 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Rab3c-203ENSMUST00000224180 967 ntBASIC15.98■□□□□ 0.15
Cdh11P55288 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Cdh11P55288 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Cdh11P55288 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.97■□□□□ 0.15
Cdh11P55288 Gm20049-201ENSMUST00000219950 730 ntBASIC15.97■□□□□ 0.15
Cdh11P55288 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Cdh11P55288 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.96■□□□□ 0.15
Cdh11P55288 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cdh11P55288 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cdh11P55288 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cdh11P55288 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cdh11P55288 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cdh11P55288 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC15.96■□□□□ 0.15
Cdh11P55288 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cdh11P55288 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
Cdh11P55288 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
Cdh11P55288 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cdh11P55288 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
Cdh11P55288 Gm7292-201ENSMUST00000194706 2527 ntBASIC15.96■□□□□ 0.14
Cdh11P55288 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Cdh11P55288 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Cdh11P55288 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
Cdh11P55288 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
Cdh11P55288 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Cdh11P55288 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC15.95■□□□□ 0.14
Cdh11P55288 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC15.95■□□□□ 0.14
Cdh11P55288 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC15.95■□□□□ 0.14
Cdh11P55288 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC15.95■□□□□ 0.14
Cdh11P55288 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cdh11P55288 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms