Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox3P53784 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox3P53784 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Sox3P53784 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox3P53784 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Sox3P53784 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.75■□□□□ 0.27
Sox3P53784 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.75■□□□□ 0.27
Sox3P53784 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Sox3P53784 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Sox3P53784 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
Sox3P53784 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Sox3P53784 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Gm43183-201ENSMUST00000200632 547 ntBASIC16.74■□□□□ 0.27
Sox3P53784 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Sox3P53784 AC156016.1-201ENSMUST00000227190 1035 ntBASIC16.74■□□□□ 0.27
Sox3P53784 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Fst-202ENSMUST00000223640 2612 ntBASIC16.74■□□□□ 0.27
Sox3P53784 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
Sox3P53784 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox3P53784 Flg-201ENSMUST00000050758 1488 ntBASIC16.73■□□□□ 0.27
Sox3P53784 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC16.73■□□□□ 0.27
Sox3P53784 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Sox3P53784 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
Sox3P53784 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Ank2-226ENSMUST00000189368 339 ntBASIC16.73■□□□□ 0.27
Sox3P53784 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.73■□□□□ 0.27
Sox3P53784 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.73■□□□□ 0.27
Sox3P53784 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC16.73■□□□□ 0.27
Sox3P53784 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sox3P53784 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Sox3P53784 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.72■□□□□ 0.27
Sox3P53784 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 AA414768-201ENSMUST00000121924 1257 ntBASIC16.72■□□□□ 0.27
Sox3P53784 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.72■□□□□ 0.27
Sox3P53784 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC16.72■□□□□ 0.27
Sox3P53784 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Sox3P53784 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sox3P53784 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Sox3P53784 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sox3P53784 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sox3P53784 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.71■□□□□ 0.27
Sox3P53784 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sox3P53784 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sox3P53784 Gm10013-201ENSMUST00000106074 672 ntBASIC16.71■□□□□ 0.27
Sox3P53784 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
Sox3P53784 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms