Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prom1O54990 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.37■□□□□ 0.69
Prom1O54990 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Prom1O54990 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Prom1O54990 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.37■□□□□ 0.69
Prom1O54990 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Prom1O54990 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Prom1O54990 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prom1O54990 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prom1O54990 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prom1O54990 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Prom1O54990 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Prom1O54990 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Prom1O54990 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC19.36■□□□□ 0.69
Prom1O54990 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Prom1O54990 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.36■□□□□ 0.69
Prom1O54990 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Prom1O54990 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Prom1O54990 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.35■□□□□ 0.69
Prom1O54990 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Prom1O54990 Gm13474-201ENSMUST00000122466 815 ntBASIC19.35■□□□□ 0.69
Prom1O54990 Gm25016-201ENSMUST00000158399 131 ntBASIC19.35■□□□□ 0.69
Prom1O54990 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.35■□□□□ 0.69
Prom1O54990 Gm29518-201ENSMUST00000190858 372 ntBASIC19.35■□□□□ 0.69
Prom1O54990 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Prom1O54990 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Idnk-204ENSMUST00000226010 1898 ntBASIC19.35■□□□□ 0.69
Prom1O54990 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Prom1O54990 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prom1O54990 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prom1O54990 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Prom1O54990 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.34■□□□□ 0.69
Prom1O54990 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Prom1O54990 Gm27389-201ENSMUST00000183622 195 ntBASIC19.34■□□□□ 0.69
Prom1O54990 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Prom1O54990 Mir1668-201ENSMUST00000184114 107 ntBASIC19.34■□□□□ 0.69
Prom1O54990 Gm27704-201ENSMUST00000185094 107 ntBASIC19.34■□□□□ 0.69
Prom1O54990 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC19.34■□□□□ 0.69
Prom1O54990 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.34■□□□□ 0.69
Prom1O54990 Il3ra-202ENSMUST00000223589 738 ntBASIC19.34■□□□□ 0.69
Prom1O54990 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prom1O54990 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prom1O54990 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prom1O54990 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Prom1O54990 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Prom1O54990 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Prom1O54990 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Prom1O54990 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Prom1O54990 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Prom1O54990 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Prom1O54990 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC19.33■□□□□ 0.68
Prom1O54990 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
Prom1O54990 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Prom1O54990 Gm5587-201ENSMUST00000206270 674 ntBASIC19.33■□□□□ 0.68
Prom1O54990 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prom1O54990 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.33■□□□□ 0.68
Prom1O54990 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Prom1O54990 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Prom1O54990 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Prom1O54990 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.32■□□□□ 0.68
Prom1O54990 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC19.32■□□□□ 0.68
Prom1O54990 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.32■□□□□ 0.68
Prom1O54990 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Prom1O54990 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Prom1O54990 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.31■□□□□ 0.68
Prom1O54990 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.31■□□□□ 0.68
Prom1O54990 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Prom1O54990 Gm37025-201ENSMUST00000195159 829 ntBASIC19.31■□□□□ 0.68
Prom1O54990 Gm17808-201ENSMUST00000200859 894 ntBASIC19.31■□□□□ 0.68
Prom1O54990 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC19.31■□□□□ 0.68
Prom1O54990 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
Prom1O54990 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Prom1O54990 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Prom1O54990 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Prom1O54990 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Prom1O54990 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms