Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hmgb3O54879 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Hmgb3O54879 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Hmgb3O54879 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC14.57□□□□□ -0.08
Hmgb3O54879 Gm43137-201ENSMUST00000198052 594 ntBASIC14.57□□□□□ -0.08
Hmgb3O54879 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Hmgb3O54879 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hmgb3O54879 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Hmgb3O54879 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.56□□□□□ -0.08
Hmgb3O54879 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC14.56□□□□□ -0.08
Hmgb3O54879 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Hmgb3O54879 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
Hmgb3O54879 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC14.56□□□□□ -0.08
Hmgb3O54879 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
Hmgb3O54879 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Gm12251-201ENSMUST00000117893 792 ntBASIC14.56□□□□□ -0.08
Hmgb3O54879 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC14.56□□□□□ -0.08
Hmgb3O54879 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 AC137127.1-201ENSMUST00000213466 1078 ntBASIC14.56□□□□□ -0.08
Hmgb3O54879 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Hmgb3O54879 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hmgb3O54879 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Hmgb3O54879 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Hmgb3O54879 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Hmgb3O54879 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Gm37805-201ENSMUST00000192612 1094 ntBASIC14.55□□□□□ -0.08
Hmgb3O54879 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC14.55□□□□□ -0.08
Hmgb3O54879 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hmgb3O54879 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Gm11421-201ENSMUST00000122124 294 ntBASIC14.54□□□□□ -0.08
Hmgb3O54879 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Flvcr1-202ENSMUST00000191946 1216 ntBASIC14.54□□□□□ -0.08
Hmgb3O54879 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Hmgb3O54879 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms