Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk4O35493 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk4O35493 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk4O35493 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.81■□□□□ 0.28
Clk4O35493 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clk4O35493 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Clk4O35493 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Clk4O35493 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC16.8■□□□□ 0.28
Clk4O35493 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.8■□□□□ 0.28
Clk4O35493 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Clk4O35493 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Mtag2-201ENSMUST00000058665 714 ntBASIC16.8■□□□□ 0.28
Clk4O35493 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.8■□□□□ 0.28
Clk4O35493 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Clk4O35493 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clk4O35493 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Clk4O35493 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Clk4O35493 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.79■□□□□ 0.28
Clk4O35493 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
Clk4O35493 AC123834.2-201ENSMUST00000224038 2340 ntBASIC16.79■□□□□ 0.28
Clk4O35493 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC16.79■□□□□ 0.28
Clk4O35493 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.79■□□□□ 0.28
Clk4O35493 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC16.79■□□□□ 0.28
Clk4O35493 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.79■□□□□ 0.28
Clk4O35493 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.79■□□□□ 0.28
Clk4O35493 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clk4O35493 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Clk4O35493 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Clk4O35493 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Clk4O35493 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC16.78■□□□□ 0.28
Clk4O35493 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC16.78■□□□□ 0.28
Clk4O35493 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Clk4O35493 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16.77■□□□□ 0.28
Clk4O35493 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clk4O35493 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.77■□□□□ 0.28
Clk4O35493 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Clk4O35493 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clk4O35493 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clk4O35493 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC16.77■□□□□ 0.28
Clk4O35493 Gm11643-201ENSMUST00000119578 864 ntBASIC16.77■□□□□ 0.28
Clk4O35493 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.77■□□□□ 0.28
Clk4O35493 Mir2861-201ENSMUST00000175539 82 ntBASIC16.77■□□□□ 0.28
Clk4O35493 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clk4O35493 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Clk4O35493 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.77■□□□□ 0.28
Clk4O35493 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk4O35493 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk4O35493 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk4O35493 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Clk4O35493 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.76■□□□□ 0.27
Clk4O35493 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.76■□□□□ 0.27
Clk4O35493 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.76■□□□□ 0.27
Clk4O35493 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clk4O35493 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms