Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc40Q8BI79 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.32■□□□□ 0.52
Ccdc40Q8BI79 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc40Q8BI79 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc40Q8BI79 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Ccdc40Q8BI79 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Gm5408-201ENSMUST00000197998 747 ntBASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc40Q8BI79 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 AC122769.4-201ENSMUST00000228166 901 ntBASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc40Q8BI79 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Gm10602-201ENSMUST00000098239 609 ntBASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc40Q8BI79 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Gm38285-201ENSMUST00000192928 922 ntBASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Ccdc40Q8BI79 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Flg-201ENSMUST00000050758 1488 ntBASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc40Q8BI79 CT010478.1-201ENSMUST00000220747 2787 ntBASIC18.27■□□□□ 0.51
Ccdc40Q8BI79 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ccdc40Q8BI79 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms