Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Tpm4Q6IRU2 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Gm8969-201ENSMUST00000199694 526 ntBASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tpm4Q6IRU2 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Tpm4Q6IRU2 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Tpm4Q6IRU2 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Gm45412-201ENSMUST00000210217 2275 ntBASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Gm42642-201ENSMUST00000200683 355 ntBASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tpm4Q6IRU2 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Tpm4Q6IRU2 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Gm10033-202ENSMUST00000211874 928 ntBASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Tpm4Q6IRU2 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tpm4Q6IRU2 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms