Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf3aQ3ULJ3 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Gm9013-201ENSMUST00000132939 882 ntBASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Upf3aQ3ULJ3 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Gm7213-201ENSMUST00000215977 950 ntBASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.49■□□□□ 0.55
Upf3aQ3ULJ3 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Upf3aQ3ULJ3 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Gm27704-201ENSMUST00000185094 107 ntBASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Upf3aQ3ULJ3 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Gm29518-201ENSMUST00000190858 372 ntBASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf3aQ3ULJ3 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.46■□□□□ 0.54
Upf3aQ3ULJ3 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf3aQ3ULJ3 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms