Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Rnf180Q3U827 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC20.78■□□□□ 0.92
Rnf180Q3U827 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf180Q3U827 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Gm9727-201ENSMUST00000161387 555 ntBASIC20.77■□□□□ 0.92
Rnf180Q3U827 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Rnf180Q3U827 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Rnf180Q3U827 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Rnf180Q3U827 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC20.76■□□□□ 0.91
Rnf180Q3U827 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 AC154222.1-201ENSMUST00000223882 475 ntBASIC20.76■□□□□ 0.91
Rnf180Q3U827 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf180Q3U827 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.75■□□□□ 0.91
Rnf180Q3U827 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.75■□□□□ 0.91
Rnf180Q3U827 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Gm15165-201ENSMUST00000118140 502 ntBASIC20.75■□□□□ 0.91
Rnf180Q3U827 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Gm43935-201ENSMUST00000203569 1050 ntBASIC20.75■□□□□ 0.91
Rnf180Q3U827 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf180Q3U827 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Gm14140-201ENSMUST00000119999 995 ntBASIC20.74■□□□□ 0.91
Rnf180Q3U827 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 AC090659.1-201ENSMUST00000224334 768 ntBASIC20.74■□□□□ 0.91
Rnf180Q3U827 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf180Q3U827 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf180Q3U827 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf180Q3U827 Gm27000-201ENSMUST00000182943 842 ntBASIC20.73■□□□□ 0.91
Rnf180Q3U827 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf180Q3U827 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf180Q3U827 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.73■□□□□ 0.91
Rnf180Q3U827 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf180Q3U827 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf180Q3U827 Zkscan4-202ENSMUST00000225845 1506 ntBASIC20.73■□□□□ 0.91
Rnf180Q3U827 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 AC153794.1-201ENSMUST00000169148 126 ntBASIC20.72■□□□□ 0.91
Rnf180Q3U827 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf180Q3U827 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf180Q3U827 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf180Q3U827 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Rnf180Q3U827 Gm6089-201ENSMUST00000197666 938 ntBASIC20.71■□□□□ 0.91
Rnf180Q3U827 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf180Q3U827 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms