Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Lig3P97386 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.11■□□□□ 0.65
Lig3P97386 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Lig3P97386 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Gm6659-201ENSMUST00000174752 547 ntBASIC19.11■□□□□ 0.65
Lig3P97386 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.11■□□□□ 0.65
Lig3P97386 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Lig3P97386 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lig3P97386 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.11■□□□□ 0.65
Lig3P97386 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Lig3P97386 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC19.1■□□□□ 0.65
Lig3P97386 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.1■□□□□ 0.65
Lig3P97386 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.1■□□□□ 0.65
Lig3P97386 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lig3P97386 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Lig3P97386 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Lig3P97386 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.09■□□□□ 0.65
Lig3P97386 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Lig3P97386 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lig3P97386 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lig3P97386 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Lig3P97386 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Lig3P97386 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lig3P97386 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lig3P97386 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lig3P97386 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Lig3P97386 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.08■□□□□ 0.64
Lig3P97386 Gm21814-202ENSMUST00000203277 873 ntBASIC19.08■□□□□ 0.64
Lig3P97386 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Lig3P97386 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Lig3P97386 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Lig3P97386 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Lig3P97386 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Lig3P97386 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Lig3P97386 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.07■□□□□ 0.64
Lig3P97386 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Lig3P97386 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Lig3P97386 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.07■□□□□ 0.64
Lig3P97386 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Lig3P97386 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Lig3P97386 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.07■□□□□ 0.64
Lig3P97386 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lig3P97386 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
Lig3P97386 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Lig3P97386 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.06■□□□□ 0.64
Lig3P97386 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Lig3P97386 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Lig3P97386 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC19.06■□□□□ 0.64
Lig3P97386 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms