Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC14.48□□□□□ -0.09
Sdc1P18828 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Idnk-204ENSMUST00000226010 1898 ntBASIC14.48□□□□□ -0.09
Sdc1P18828 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
Sdc1P18828 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sdc1P18828 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC14.47□□□□□ -0.09
Sdc1P18828 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Sdc1P18828 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC14.47□□□□□ -0.09
Sdc1P18828 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Sdc1P18828 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC14.47□□□□□ -0.09
Sdc1P18828 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC14.47□□□□□ -0.09
Sdc1P18828 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Sdc1P18828 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC14.47□□□□□ -0.09
Sdc1P18828 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC14.47□□□□□ -0.09
Sdc1P18828 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Sdc1P18828 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sdc1P18828 AC069562.2-201ENSMUST00000224644 2146 ntBASIC14.47□□□□□ -0.09
Sdc1P18828 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Sdc1P18828 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC14.46□□□□□ -0.09
Sdc1P18828 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.46□□□□□ -0.09
Sdc1P18828 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Sdc1P18828 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC14.46□□□□□ -0.09
Sdc1P18828 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sdc1P18828 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Sdc1P18828 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC14.46□□□□□ -0.1
Sdc1P18828 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sdc1P18828 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sdc1P18828 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Sdc1P18828 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Sdc1P18828 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Sdc1P18828 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sdc1P18828 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC14.44□□□□□ -0.1
Sdc1P18828 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Gm9867-201ENSMUST00000192212 2647 ntBASIC14.44□□□□□ -0.1
Sdc1P18828 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Gm5921-201ENSMUST00000075898 882 ntBASIC14.44□□□□□ -0.1
Sdc1P18828 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Sdc1P18828 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sdc1P18828 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms