Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC14.19□□□□□ -0.14
Cdx1P18111 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Cdx1P18111 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Cdx1P18111 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC14.19□□□□□ -0.14
Cdx1P18111 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Gm9988-201ENSMUST00000069786 435 ntBASIC14.19□□□□□ -0.14
Cdx1P18111 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC14.19□□□□□ -0.14
Cdx1P18111 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdx1P18111 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Cdx1P18111 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC14.18□□□□□ -0.14
Cdx1P18111 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Cdx1P18111 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Cdx1P18111 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC14.18□□□□□ -0.14
Cdx1P18111 AC112142.1-201ENSMUST00000228796 918 ntBASIC14.18□□□□□ -0.14
Cdx1P18111 Gm10602-201ENSMUST00000098239 609 ntBASIC14.18□□□□□ -0.14
Cdx1P18111 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
Cdx1P18111 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Cdx1P18111 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cdx1P18111 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC14.17□□□□□ -0.14
Cdx1P18111 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Cdx1P18111 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.17□□□□□ -0.14
Cdx1P18111 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Cdx1P18111 Gm12933-201ENSMUST00000120203 872 ntBASIC14.17□□□□□ -0.14
Cdx1P18111 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC14.17□□□□□ -0.14
Cdx1P18111 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC14.17□□□□□ -0.14
Cdx1P18111 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC14.17□□□□□ -0.14
Cdx1P18111 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cdx1P18111 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdx1P18111 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC14.17□□□□□ -0.14
Cdx1P18111 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC14.16□□□□□ -0.14
Cdx1P18111 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.16□□□□□ -0.14
Cdx1P18111 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Gm13234-201ENSMUST00000120010 747 ntBASIC14.16□□□□□ -0.14
Cdx1P18111 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC14.16□□□□□ -0.14
Cdx1P18111 Gm27801-201ENSMUST00000184174 223 ntBASIC14.16□□□□□ -0.14
Cdx1P18111 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC14.16□□□□□ -0.14
Cdx1P18111 CT025689.6-201ENSMUST00000224991 1104 ntBASIC14.16□□□□□ -0.14
Cdx1P18111 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cdx1P18111 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms