Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Gm13559-201ENSMUST00000120476 863 ntBASIC16.66■□□□□ 0.26
Msx1P13297 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC16.66■□□□□ 0.26
Msx1P13297 Gm16042-201ENSMUST00000204813 1247 ntBASIC16.66■□□□□ 0.26
Msx1P13297 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC16.66■□□□□ 0.26
Msx1P13297 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Msx1P13297 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Msx1P13297 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
Msx1P13297 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Msx1P13297 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Msx1P13297 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.65■□□□□ 0.26
Msx1P13297 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC16.65■□□□□ 0.26
Msx1P13297 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Msx1P13297 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Msx1P13297 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC16.64■□□□□ 0.26
Msx1P13297 AC124581.1-201ENSMUST00000225416 1399 ntBASIC16.64■□□□□ 0.26
Msx1P13297 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Msx1P13297 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Gm6659-201ENSMUST00000174752 547 ntBASIC16.64■□□□□ 0.25
Msx1P13297 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.64■□□□□ 0.25
Msx1P13297 AC156016.1-201ENSMUST00000227190 1035 ntBASIC16.64■□□□□ 0.25
Msx1P13297 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Msx1P13297 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Msx1P13297 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC16.63■□□□□ 0.25
Msx1P13297 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
Msx1P13297 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.63■□□□□ 0.25
Msx1P13297 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.63■□□□□ 0.25
Msx1P13297 Gm11539-201ENSMUST00000119837 557 ntBASIC16.63■□□□□ 0.25
Msx1P13297 Gm13436-201ENSMUST00000120418 567 ntBASIC16.63■□□□□ 0.25
Msx1P13297 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Gm6728-201ENSMUST00000178117 1065 ntBASIC16.63■□□□□ 0.25
Msx1P13297 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.63■□□□□ 0.25
Msx1P13297 Odf3b-204ENSMUST00000227834 930 ntBASIC16.63■□□□□ 0.25
Msx1P13297 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Msx1P13297 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Msx1P13297 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msx1P13297 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msx1P13297 Gm27741-201ENSMUST00000185060 237 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms