Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.25■□□□□ 0.35
Chd3B1AR17 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Gm29791-202ENSMUST00000207888 369 ntBASIC17.25■□□□□ 0.35
Chd3B1AR17 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.25■□□□□ 0.35
Chd3B1AR17 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Chd3B1AR17 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Chd3B1AR17 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Chd3B1AR17 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Gm18959-201ENSMUST00000208954 655 ntBASIC17.24■□□□□ 0.35
Chd3B1AR17 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.24■□□□□ 0.35
Chd3B1AR17 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.24■□□□□ 0.35
Chd3B1AR17 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Chd3B1AR17 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC17.23■□□□□ 0.35
Chd3B1AR17 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Chd3B1AR17 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Gm18958-201ENSMUST00000174258 762 ntBASIC17.23■□□□□ 0.35
Chd3B1AR17 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Chd3B1AR17 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chd3B1AR17 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Chd3B1AR17 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.22■□□□□ 0.35
Chd3B1AR17 Gm18032-201ENSMUST00000222541 538 ntBASIC17.22■□□□□ 0.35
Chd3B1AR17 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Chd3B1AR17 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.22■□□□□ 0.35
Chd3B1AR17 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.22■□□□□ 0.35
Chd3B1AR17 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chd3B1AR17 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Chd3B1AR17 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Gm7638-201ENSMUST00000121348 967 ntBASIC17.21■□□□□ 0.35
Chd3B1AR17 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.21■□□□□ 0.35
Chd3B1AR17 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC17.21■□□□□ 0.35
Chd3B1AR17 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC17.21■□□□□ 0.35
Chd3B1AR17 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC17.21■□□□□ 0.35
Chd3B1AR17 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chd3B1AR17 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Chd3B1AR17 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
Chd3B1AR17 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Chd3B1AR17 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.2■□□□□ 0.34
Chd3B1AR17 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.2■□□□□ 0.34
Chd3B1AR17 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Chd3B1AR17 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Chd3B1AR17 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
Chd3B1AR17 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Chd3B1AR17 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC17.2■□□□□ 0.34
Chd3B1AR17 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Chd3B1AR17 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chd3B1AR17 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms